Tools and Resources
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Software
BIISQVersion 1.0.0Bayesian nonparametric discovery of Isoforms and Individual Specific Quantification with BIISQ.
HapCompassVersion 0.8.2HapCompass - fast cycle basis algorithms for accurate diploid and polyploid haplotype assembly.
TractatusVersion 0.0.1Tractatus - an exact and subquadratic algorithm for inferring identity-by-descent multi-shared haplotype tracts.
Code for Nematostella vectensis reference transcriptomeVersion 1.0.0A quantitative reference transcriptome for Nematostella vectensis earlyembryonic development - a pipeline for de novo assembly in emergingmodel systems.
DELISHUSVersion 0.1.0DELISHUS - an e cient and exact algorithm for genome-wide detection of deletion polymorphism in autism.
CYRENEVersion 1.0.0CYRENE cis-Regulatory Genome Browser.